{"id":20,"date":"2023-03-18T21:28:20","date_gmt":"2023-03-18T20:28:20","guid":{"rendered":"http:\/\/insilico-analysis.com\/?page_id=20"},"modified":"2024-01-28T23:35:38","modified_gmt":"2024-01-28T22:35:38","slug":"proteins","status":"publish","type":"page","link":"https:\/\/insilico-analysis.com\/index.php\/proteins\/","title":{"rendered":"Proteins"},"content":{"rendered":"
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Protein ANALYSIS<\/h4>\n <\/div>\n <\/div>\n
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o  Protein sequence analysis and propriety prediction<\/p>\n

o  Multiple Sequence and Structure Alignment<\/p>\n

o  Annotate 3D Properties onto Sequences<\/p>\n

o  Analyze Conserved Residues<\/p>\n

o  Peptide 3D structure building <\/p>\n

o  Predict 3D Protein Structure from Sequence<\/p>\n

o  Protein Structure Validation<\/p>\n

o  Active Site Detection and Analysis<\/p>\n

o  Explore Mutations and Rotamers<\/p>\n

o  Conformational Analysis<\/p>\n

o  Protein properties<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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Protein modeling and docking<\/h4>\n <\/div>\n <\/div>\n
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o  Site Finder<\/p>\n

o  Protein-Ligand Docking<\/p>\n

o  Protein-Protein Docking<\/p>\n

o  Rescoring<\/p>\n

o  Filtering<\/p>\n

o  Protein Ligand Interaction Fingerprints<\/p>\n

o  Database ligand Screening<\/p>\n

o  Creating a similar ligand database<\/p>\n

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Molecular Dynamics Simulations<\/h4>\n <\/div>\n <\/div>\n
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o  Protein , Protein-ligand , Protein-ADN\/ARN<\/p>\n

o  RMSD , RMSF, ROG, SASA, H_bonds, Protein Ligands<\/p>\n

Contact,SSE, PCA, DCCM, MMPBSA<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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Protein ANALYSIS o  Protein sequence analysis and propriety prediction o  Multiple Sequence and Structure Alignment o  Annotate 3D Properties onto Sequences o  Analyze Conserved Residues o  Peptide 3D structure building o  Predict 3D Protein Structure from Sequence o  Protein Structure Validation o  Active Site Detection and Analysis o  Explore Mutations and Rotamers o  Conformational Analysis o  Protein properties Protein modeling and docking o  Site Finder o  Protein-Ligand Docking […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-templates\/full-width-page.php","meta":{"footnotes":""},"class_list":["post-20","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/insilico-analysis.com\/index.php\/wp-json\/wp\/v2\/pages\/20","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/insilico-analysis.com\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/insilico-analysis.com\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/insilico-analysis.com\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/insilico-analysis.com\/index.php\/wp-json\/wp\/v2\/comments?post=20"}],"version-history":[{"count":8,"href":"https:\/\/insilico-analysis.com\/index.php\/wp-json\/wp\/v2\/pages\/20\/revisions"}],"predecessor-version":[{"id":924,"href":"https:\/\/insilico-analysis.com\/index.php\/wp-json\/wp\/v2\/pages\/20\/revisions\/924"}],"wp:attachment":[{"href":"https:\/\/insilico-analysis.com\/index.php\/wp-json\/wp\/v2\/media?parent=20"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}