Protein ANALYSIS
o Protein sequence analysis and propriety prediction
o Multiple Sequence and Structure Alignment
o Annotate 3D Properties onto Sequences
o Analyze Conserved Residues
o Peptide 3D structure building
o Predict 3D Protein Structure from Sequence
o Protein Structure Validation
o Active Site Detection and Analysis
o Explore Mutations and Rotamers
o Conformational Analysis
o Protein properties
Protein modeling and docking
o Site Finder
o Protein-Ligand Docking
o Protein-Protein Docking
o Rescoring
o Filtering
o Protein Ligand Interaction Fingerprints
o Database ligand Screening
o Creating a similar ligand database
Molecular Dynamics Simulations
o Protein , Protein-ligand , Protein-ADN/ARN
o RMSD , RMSF, ROG, SASA, H_bonds, Protein Ligands
Contact,SSE, PCA, DCCM, MMPBSA